./jsmol/j2s/core/package.js
-- required by ClazzNode ajax=false async=true
./jsmol/j2s/core/core.z.js
-- required by ClazzNode ajax=false async=true
./jsmol/j2s/J/g3d/PixelatorT.js
-- required by J.g3d.Graphics3D ajax=false async=true
JSmol exec jmolApplet2 start applet null
Jmol JavaScript applet jmolApplet2__7471519905576907__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet2__7471519905576907__)
vwrOptions:
{ "name":"jmolApplet2","applet":true,"documentBase":"https://www.worldofmolecules.com/3D/hydrogen-bonds-in-water-and-ice.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet2__7471519905576907__","codePath":"https://www.worldofmolecules.com/3D/./jsmol/j2s/","display":"jmolApplet2_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"7471519905576907","bgcolor":"#FFFFFF" }
setting document base to "https://www.worldofmolecules.com/3D/hydrogen-bonds-in-water-and-ice.html"
(C) 2012 Jmol Development
Jmol Version: 14.2.12_2015.02.04 2015-02-04 07:52
java.vendor: Java2Script (HTML5)
java.version: 2014-12-19 08:17:57 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet2 (signed)
./jsmol/j2s/core/corescript.z.js
-- required by ClazzNode ajax=true async=false
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet2__7471519905576907__ ready
script 1 started
FileManager.getAtomSetCollectionFromFile(water_dimer.pdb)
FileManager opening 1 https://www.worldofmolecules.com/3D/water_dimer.pdb
The Resolver thinks Pdb
./jsmol/j2s/core/corebio.z.js
-- required by ClazzNode ajax=true async=false
./jsmol/j2s/J/render/MeshRenderer.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
./jsmol/j2s/J/shape/Mesh.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
./jsmol/j2s/J/renderbio/RocketRenderer.js
-- required by J.renderbio.RocketsRenderer ajax=true async=false
Time for openFile(water_dimer.pdb): 340 ms
reading 6 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
6 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
null
./jsmol/j2s/J/thread/SpinThread.js
-- required by ClazzNode ajax=true async=false
6 atoms selected
./jsmol/j2s/core/corescriptcmd.z.js
-- required by ClazzNode ajax=true async=false
Standard Hbond calculation
1 hydrogen bonds
Script completed
Jmol script terminated
JSmol exec jmolApplet1 start applet null
Jmol JavaScript applet jmolApplet1__7471519905576907__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet1__7471519905576907__)
vwrOptions:
{ "name":"jmolApplet1","applet":true,"documentBase":"https://www.worldofmolecules.com/3D/hydrogen-bonds-in-water-and-ice.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet1__7471519905576907__","codePath":"https://www.worldofmolecules.com/3D/./jsmol/j2s/","display":"jmolApplet1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"7471519905576907","bgcolor":"#FFFFFF" }
setting document base to "https://www.worldofmolecules.com/3D/hydrogen-bonds-in-water-and-ice.html"
(C) 2012 Jmol Development
Jmol Version: 14.2.12_2015.02.04 2015-02-04 07:52
java.vendor: Java2Script (HTML5)
java.version: 2014-12-19 08:17:57 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet1 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet1__7471519905576907__ ready
script 1 started
FileManager.getAtomSetCollectionFromFile(water_box.pdb)
FileManager opening 1 https://www.worldofmolecules.com/3D/water_box.pdb
The Resolver thinks Pdb
Time for openFile(water_box.pdb): 57 ms
reading 96 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
96 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
null
96 atoms selected
Standard Hbond calculation
24 hydrogen bonds
Script completed
Jmol script terminated
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__7471519905576907__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet0__7471519905576907__)
vwrOptions:
{ "name":"jmolApplet0","applet":true,"documentBase":"https://www.worldofmolecules.com/3D/hydrogen-bonds-in-water-and-ice.html","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__7471519905576907__","codePath":"https://www.worldofmolecules.com/3D/./jsmol/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"7471519905576907","bgcolor":"#FFFFFF" }
setting document base to "https://www.worldofmolecules.com/3D/hydrogen-bonds-in-water-and-ice.html"
(C) 2012 Jmol Development
Jmol Version: 14.2.12_2015.02.04 2015-02-04 07:52
java.vendor: Java2Script (HTML5)
java.version: 2014-12-19 08:17:57 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__7471519905576907__ ready
script 1 started
FileManager.getAtomSetCollectionFromFile(ice.pdb)
FileManager opening 1 https://www.worldofmolecules.com/3D/ice.pdb
The Resolver thinks Pdb
Time for openFile(ice.pdb): 56 ms
reading 84 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
84 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
null
84 atoms selected
Standard Hbond calculation
39 hydrogen bonds
Script completed
Jmol script terminated
spinFPS is set too fast (30) -- can't keep up!
spinFPS is set too fast (30) -- can't keep up!